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Biotechnology Information nucleotide basic local alignment search blastn tool
Nucleotide Basic Local Alignment Search Blastn Tool, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nucleotide+basic+local+alignment+search+tool/alignment+basic+local+search+tool/pmc13049905-105-25-19
Average 86 stars, based on 1 article reviews
nucleotide basic local alignment search blastn tool - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

Polymerase Chain Reaction:

Article Title: Influence of Major Environmental Parameters on Patulin Production by Penicillium expansum OM1 and Its Growth on Apple Puree Agar Media.
Article Snippet: .. Polymerase chain reaction (PCR) successfully amplified the ITS region on genomic DNA of all seven fungal strains, and we compared the nucleotide sequences in the PCR products from the fungal isolates with those of reference strains, which were fetched from the GenBank database at the National Center for Biotechnology Information (NCBI) website, using nucleotide Basic Local Alignment Search Tool (BLASTn, https://blast.ncbi.nlm.nih.gov/, accessed on March 2022). ..

Article Title: A New In-Line GAC-Based Device for Concentrating Viruses in Treated Wastewater: Implications for Full-Scale UV C LED Treatment
Article Snippet: UV C LEDs are an emerging technology offering wavelength-specific control for microbial inactivation in water and wastewater treatment.. As these systems advance, complementary monitoring methods are needed to accurately evaluate the treatment performance and viral persistence in complex effluents.. This study developed and evaluated an in-line granular activated carbon (GAC) sampling device designed to concentrate large volumes of wastewater from a full-scale UV C LED reactor.

Article Title: A New In-Line GAC-Based Device for Concentrating Viruses in Treated Wastewater: Implications for Full-Scale UV C LED Treatment
Article Snippet: .. To achieve this, each PCR target region was compared against the National Centre for Biotechnology Information GenBank database using the nucleotide basic local alignment search tool. ..

Amplification:

Article Title: Influence of Major Environmental Parameters on Patulin Production by Penicillium expansum OM1 and Its Growth on Apple Puree Agar Media.
Article Snippet: .. Polymerase chain reaction (PCR) successfully amplified the ITS region on genomic DNA of all seven fungal strains, and we compared the nucleotide sequences in the PCR products from the fungal isolates with those of reference strains, which were fetched from the GenBank database at the National Center for Biotechnology Information (NCBI) website, using nucleotide Basic Local Alignment Search Tool (BLASTn, https://blast.ncbi.nlm.nih.gov/, accessed on March 2022). ..

Sequencing:

Article Title: Fecal Microbiome and Bile Acid Profiles Differ in Preterm Infants with Parenteral Nutrition-associated Cholestasis
Article Snippet: Genomic DNA extraction and Illumina 16S rRNA gene sequencing of patient fecal samples were conducted by the Environmental Sample Preparation and Sequencing Facility at Argonne National Laboratory (Lemont, IL, USA)., The raw data were subsequently processed using the DADA2 pipeline implemented into QIIME2 version 2019.7 and classified to the genus level using the IDTAXA method included in R package DECIPHER version 2.14.0 and the Genome Taxonomy Database version 8. .. An additional classification step for determining species-like groups (i.e., the highest taxonomic resolution possible by 16S rRNA gene sequencing alone) was employed using the online National Center for Biotechnology Information Nucleotide Basic Local Alignment Search Tool (4,5) with a ≥97% identity threshold, and very low abundant species-like groups of <0.1% mean abundance across all samples were culled. ..

other:

Article Title: A quantitative characterization of antibiotic resistance and its influencing factors in hospital wastewaters across Lebanon
Article Snippet: The representative sequences obtained were compared with all 16 S rRNA sequences available from the National Center for Biotechnology Information (NCBI) using the nucleotide Basic Local Alignment Search Tool (BLAST).



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